Statistical Laboratory
Iowa State University
DATE AND TIME: Monday, March 7, 2005, 4:10 p.m.
PLACE: 319 Snedecor
SPEAKER: Dan Nettleton, Department of Statistics, Iowa State
University
TITLE: Using Observed p-values to Estimate the Number of True Null
Hypotheses When Conducting Many Tests
ABSTRACT
Mosig et al. (2001, Genetics 157, 1683-1698) proposed an intuitively
appealing method for estimating the number of true null hypotheses in a multiple
test situation. They presented an iterative algorithm that relies on the
distribution of observed p-values to obtain their estimator. In this talk,
I will characterize the limit of their iterative algorithm and describe how
their estimator can be computed directly without iteration. I will compare
the performance of the resulting simple estimator with other procedures for
estimating the number of true null hypotheses from a collection of observed
p-values.
Estimation of the number of true null hypotheses plays a direct role in the
estimation of false discovery rate (FDR). The FDR concept has been used in
many modern applications involving hundreds or thousands of tests. I will
show how the proposed estimator can be used to approximate FDR for some
microarray experiments conducted at Iowa State University.
COFFEE: 3:45 p.m., 104 Snedecor Hall